Recent questions and answers in Bioinformatics / GO BioTechnology

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1

GATE2018-7
Which one of the following BLAST search programs is used to identify homologs of a genomic DNA query in a protein sequence database? blastp blastn blastx tblastn

Which one of the following BLAST search programs is used to identify homologs of a genomic DNA query in a protein sequence database?blastpblastnblastxtblastn

mahek01

300 points

mahek01 answered Oct 31, 2020

0 votes

1 answer

2

GATE2018-18
Identify the character based method(s) used for the construction of a phylogenetic tree. Maximum parsimony Neighbor joining Maximum likelihood Bootstrapping Q only P and R only Q and S only S only

Identify the character based method(s) used for the construction of a phylogenetic tree.Maximum parsimonyNeighbor joiningMaximum likelihoodBootstrappingQ onlyP and R only...

mahek01

300 points

mahek01 answered Oct 31, 2020

0 votes

1 answer

3

GATE2018-29
Determine the correctness or otherwise of the following Assertion [a] and the Reason [r] Assertion: Ab initio gene finding algorithms that predict protein coding genes in eukaryotic genomes are not completely accurate. Reason: Eukaryotic splice sites are difficult to predict. Both [a] and [ ... correct reason for [a] Both [a] and [r] are true but [r] is not the correct reason for [a]

Determine the correctness or otherwise of the following Assertion [a] and the Reason [r]Assertion: Ab initio gene finding algorithms that predict protein coding genes in ...

mahek01

300 points

mahek01 answered Oct 31, 2020

0 votes

1 answer

4

GATE2018-37
An analysis of DNA-protein interactions was carried out using all DNA-protein complexes in the protein data bank (PDB). The frequency distribution of four amino acid residues, represented as P, Q, R and S, occurring in non-covalent interactions between the protein and DNA backbone is shown below. Which ... Gln, Q-Glu, R-Lys, S-Arg P-Asn, Q-Asp, R-Arg, S-Lys P-His, Q-Glu, R-Gln, S-Lys

An analysis of DNA-protein interactions was carried out using all DNA-protein complexes in the protein data bank (PDB). The frequency distribution of four amino acid resi...

mahek01

300 points

mahek01 answered Oct 31, 2020

0 votes

1 answer

5

GATE2018-51
Consider the following alignment of two DNA sequences:$\mathbf{AGTAAC} \\ \mathbf{AA}\text{- -}\mathbf{AC}$Assuming an affine gap scoring scheme of an identity matrix for substitution, a gap initiation penalty of $1$ and a gap extension penalty of $0.1$, the score of the alignment is (up to one decimal place) __________

Consider the following alignment of two DNA sequences:$$\mathbf{AGTAAC} \\ \mathbf{AA}\text{- -}\mathbf{AC}$$Assuming an affine gap scoring scheme of an identity matrix f...

mahek01

300 points

mahek01 answered Oct 31, 2020